library(tidyverse)
library(targets)
library(kableExtra)
Leaf disc vs whole-leaf LMA (species-level)
Pooled

Seprated

coef

SMA table
species
tar_load(sma_sp_tab)
sma_sp_tab |>
kable() |>
kable_styling()
|
Data
|
Slope
|
Intercept
|
R2
|
|
All
|
0.97 [0.94, 1.01]
|
0.09 [0.02, 0.16]
|
0.87
|
|
Thick~Large
|
0.93 [0.85, 1.03]
|
0.19 [0.01, 0.37]
|
0.86
|
|
Thick~Small
|
1.02 [0.97, 1.07]
|
0 [-0.11, 0.11]
|
0.93
|
|
Thin~Large
|
0.91 [0.82, 1.02]
|
0.2 [0.02, 0.37]
|
0.71
|
|
Thin~Small
|
0.93 [0.83, 1.03]
|
0.16 [-0.02, 0.35]
|
0.84
|
species LD
tar_load(sma_sp_ld_tab)
sma_sp_ld_tab |>
kable() |>
kable_styling()
|
Data
|
Slope
|
Intercept
|
R2
|
|
All
|
0.97 [0.94, 1.01]
|
0.09 [0.02, 0.16]
|
0.87
|
|
Dense ~ Thick~Large
|
0.96 [0.82, 1.13]
|
0.14 [-0.15, 0.43]
|
0.79
|
|
Dense ~ Thick~Small
|
1.02 [0.94, 1.11]
|
-0.01 [-0.17, 0.15]
|
0.90
|
|
Dense ~ Thin~Large
|
0.8 [0.66, 0.98]
|
0.37 [0.09, 0.64]
|
0.60
|
|
Dense ~ Thin~Small
|
0.86 [0.72, 1.03]
|
0.27 [-0.01, 0.55]
|
0.81
|
|
Nondense ~ Thick~Large
|
0.75 [0.59, 0.94]
|
0.58 [0.22, 0.94]
|
0.72
|
|
Nondense ~ Thick~Small
|
0.99 [0.87, 1.13]
|
0.05 [-0.23, 0.32]
|
0.82
|
|
Nondense ~ Thin~Large
|
0.77 [0.65, 0.91]
|
0.49 [0.25, 0.74]
|
0.56
|
|
Nondense ~ Thin~Small
|
0.87 [0.71, 1.06]
|
0.28 [-0.06, 0.62]
|
0.68
|
tree
tar_load(sma_tree_tab)
sma_tree_tab |>
kable() |>
kable_styling()
|
Data
|
Slope
|
Intercept
|
R2
|
|
All
|
0.96 [0.94, 0.99]
|
0.11 [0.06, 0.16]
|
0.72
|
|
Thick~Large
|
0.97 [0.9, 1.04]
|
0.12 [-0.03, 0.26]
|
0.61
|
|
Thick~Small
|
0.94 [0.9, 0.98]
|
0.16 [0.07, 0.24]
|
0.79
|
|
Thin~Large
|
0.91 [0.84, 0.97]
|
0.21 [0.09, 0.32]
|
0.45
|
|
Thin~Small
|
0.91 [0.85, 0.98]
|
0.19 [0.07, 0.31]
|
0.66
|
tree LD
tar_load(sma_tree_ld_tab)
sma_tree_ld_tab |>
kable() |>
kable_styling()
|
Data
|
Slope
|
Intercept
|
R2
|
|
All
|
0.96 [0.94, 0.99]
|
0.11 [0.06, 0.16]
|
0.72
|
|
Dense ~ Thick~Large
|
0.89 [0.79, 1]
|
0.25 [0.06, 0.44]
|
0.49
|
|
Dense ~ Thick~Small
|
0.91 [0.85, 0.97]
|
0.21 [0.1, 0.32]
|
0.76
|
|
Dense ~ Thin~Large
|
0.75 [0.67, 0.85]
|
0.44 [0.29, 0.6]
|
0.34
|
|
Dense ~ Thin~Small
|
0.8 [0.72, 0.9]
|
0.36 [0.2, 0.52]
|
0.65
|
|
Nondense ~ Thick~Large
|
0.74 [0.64, 0.86]
|
0.61 [0.38, 0.83]
|
0.43
|
|
Nondense ~ Thick~Small
|
0.84 [0.78, 0.91]
|
0.38 [0.24, 0.53]
|
0.68
|
|
Nondense ~ Thin~Large
|
0.73 [0.65, 0.81]
|
0.57 [0.42, 0.72]
|
0.28
|
|
Nondense ~ Thin~Small
|
0.89 [0.78, 1.01]
|
0.25 [0.03, 0.46]
|
0.38
|
Validation
tar_load(cv_sp)
cv_sp
#> $table
#> # A tibble: 3 × 3
#> model r2 mse
#> <chr> <dbl> <dbl>
#> 1 fit 1 0.866 0.0195
#> 2 fit 2 0.866 0.0196
#> 3 fit 3 0.867 0.0194
#>
#> $fit1
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(lma_disc), data = tree)
#>
#> Coefficients:
#> (Intercept) log(lma_disc)
#> 0.4852 0.9108
#>
#>
#> $fit2
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(la) + log(lt), data = tree,
#> offset = log(lma_disc))
#>
#> Coefficients:
#> (Intercept) log(la) log(lt)
#> 0.007418 0.036529 0.028880
#>
#>
#> $fit3
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(ld_leaf) + log(la) + log(lt),
#> data = tree, offset = log(lma_disc))
#>
#> Coefficients:
#> (Intercept) log(ld_leaf) log(la) log(lt)
#> 0.09834 0.06599 0.03733 0.04426
tar_load(cv_tree)
cv_tree
#> $table
#> # A tibble: 3 × 3
#> model r2 mse
#> <chr> <dbl> <dbl>
#> 1 fit 1 0.718 0.0421
#> 2 fit 2 0.684 0.0467
#> 3 fit 3 0.702 0.0440
#>
#> $fit1
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(lma_disc), data = tree)
#>
#> Coefficients:
#> (Intercept) log(lma_disc)
#> 0.8911 0.8176
#>
#>
#> $fit2
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(la) + log(lt), data = tree,
#> offset = log(lma_disc))
#>
#> Coefficients:
#> (Intercept) log(la) log(lt)
#> 0.05804 0.03071 0.05749
#>
#>
#> $fit3
#>
#> Call:
#> lm(formula = log(lma_leaf) ~ log(ld_leaf) + log(la) + log(lt),
#> data = tree, offset = log(lma_disc))
#>
#> Coefficients:
#> (Intercept) log(ld_leaf) log(la) log(lt)
#> 0.30044 0.16541 0.03573 0.11701
Leaf disc vs whole-leaf LMA (individual-level)

Divergence (species-level)

LMA and LD (species-level)

CV


Leaf support cost (species-level)

Computing Environment
devtools::session_info()
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